Information for 5-GGCCCGGGCCCA (Motif 12)


Reverse Opposite:

p-value:1e-47
log p-value:-1.103e+02
Information Content per bp:1.595
Number of Target Sequences with motif14477.0
Percentage of Target Sequences with motif52.90%
Number of Background Sequences with motif12967.0
Percentage of Background Sequences with motif48.48%
Average Position of motif in Targets106.2 +/- 61.6bp
Average Position of motif in Background105.6 +/- 64.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GGCCCGGGCCCA
CAGGCCNNGGCCNN

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGCCCGGGCCCA
GGCCCCGCCCCC

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGCCCGGGCCCA
AGGCCTAG-----

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGCCCGGGCCCA
ACATGCCCGGGCAT-

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCCCGGGCCCA--
TTGGCANNNTGCCAAG

MA0524.1_TFAP2C/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGCCCGGGCCCA--
TGCCCTGGGGCNANN

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCCCGGGCCCA
AGGCCTNG-----

POL011.1_XCPE1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGCCCGGGCCCA
-GGGCGGGACC-

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCCCGGGCCCA-
NAGCCCCGCCCCCN

PB0039.1_Klf7_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGCCCGGGCCCA--
TCGACCCCGCCCCTAT