Information for 13-CTTTAAAGCG (Motif 16)


Reverse Opposite:

p-value:1e-36
log p-value:-8.421e+01
Information Content per bp:1.535
Number of Target Sequences with motif5777.0
Percentage of Target Sequences with motif20.68%
Number of Background Sequences with motif4872.8
Percentage of Background Sequences with motif17.72%
Average Position of motif in Targets109.6 +/- 61.0bp
Average Position of motif in Background109.1 +/- 66.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTTTAAAGCG----
TCNCTTTACAGCGNNNT

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTTTAAAGCG
ACATCAAAGG-

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTTTAAAGCG----
TCNNTTTACAGCGNNNT

PB0184.1_Tbp_2/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTTTAAAGCG---
CCGATTTAAGCGACC

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTTTAAAGCG
ACWTCAAAGG-

MA0523.1_TCF7L2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTTTAAAGCG-
AAAGATCAAAGGAA

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTTTAAAGCG
CCTTTTATAGNC

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTTTAAAGCG-
-TTTGAAACCG

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTTAAAGCG-
ACATCAAAGGNA

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTTTAAAGCG---
TATAGATCAAAGGAAAA