Information for 1-NAAAGGCCTN (Motif 2)


Reverse Opposite:

p-value:1e-116
log p-value:-2.692e+02
Information Content per bp:1.392
Number of Target Sequences with motif16033.0
Percentage of Target Sequences with motif57.40%
Number of Background Sequences with motif13893.5
Percentage of Background Sequences with motif50.52%
Average Position of motif in Targets109.0 +/- 61.1bp
Average Position of motif in Background109.6 +/- 64.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.35
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.85
Offset:3
Orientation:forward strand
Alignment:NAAAGGCCTN-
---AGGCCTNG

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.81
Offset:3
Orientation:forward strand
Alignment:NAAAGGCCTN-
---AGGCCTAG

MA0146.2_Zfx/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:NAAAGGCCTN------
--CAGGCCNNGGCCNN

MA0484.1_HNF4G/Jaspar

Match Rank:4
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------NAAAGGCCTN
AGAGTCCAAAGTCCA-

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---NAAAGGCCTN
ANGNAAAGGTCA-

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---NAAAGGCCTN---
GGCAAAAGTCCAATAA

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-NAAAGGCCTN
NTCAAGGTCA-

MA0114.2_HNF4A/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----NAAAGGCCTN
NAGNNCAAAGTCCAN

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---NAAAGGCCTN---
TCTCAAAGGTCACGAG

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---NAAAGGCCTN---
TCTCAAAGGTCACCTG