Information for 19-CTCACACA (Motif 21)


Reverse Opposite:

p-value:1e-28
log p-value:-6.481e+01
Information Content per bp:1.739
Number of Target Sequences with motif4114.0
Percentage of Target Sequences with motif14.73%
Number of Background Sequences with motif3432.4
Percentage of Background Sequences with motif12.48%
Average Position of motif in Targets108.3 +/- 60.1bp
Average Position of motif in Background110.4 +/- 66.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CTCACACA---
AGCGGCACACACGCAA

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTCACACA
CRCCCACGCA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CTCACACA
--CACGCA

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCACACA-
KTTCACACCT

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCACACA-
TBGCACGCAA

MA0472.1_EGR2/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CTCACACA-
CCCCCGCCCACGCAC

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTCACACA-----
NNTTTTCACACCTTNNN

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTCACACA-
GGCCACACCCAN

MA0493.1_Klf1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCACACA
GGCCACACCCA

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCACACA-----
CGAAGCACACAAAATA