Information for 19-KWGATCWAGY (Motif 26)


Reverse Opposite:

p-value:1e-22
log p-value:-5.109e+01
Information Content per bp:1.544
Number of Target Sequences with motif375.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif213.2
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets105.6 +/- 57.2bp
Average Position of motif in Background108.8 +/- 62.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----KWGATCWAGY---
TNAGNTGATCAACCGGT

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:KWGATCWAGY
-AGATAASR-

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-KWGATCWAGY
NBWGATAAGR-

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:KWGATCWAGY-
-TGATTGATGA

MA0037.2_GATA3/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:KWGATCWAGY
-AGATAAGA-

MA0482.1_Gata4/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--KWGATCWAGY
NNGAGATAAGA-

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:KWGATCWAGY-
-TAATCAATTA

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:KWGATCWAGY---
-TGATTRATGGCY

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:KWGATCWAGY
CAGATAAGGN

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:KWGATCWAGY
NAGATAAGNN