Information for 16-CGAGGCGTCTTG (Motif 28)


Reverse Opposite:

p-value:1e-19
log p-value:-4.419e+01
Information Content per bp:1.588
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets117.7 +/- 62.6bp
Average Position of motif in Background121.0 +/- 88.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CGAGGCGTCTTG--
NTNNNAGGAGTCTCNTN

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CGAGGCGTCTTG
---GGCGCGCT-

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGAGGCGTCTTG
CNAGGCCT----

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGAGGCGTCTTG
--VBSYGTCTGG

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGAGGCGTCTTG
CTAGGCCT----

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGAGGCGTCTTG---
TNNNNGGTGTCATNTNT

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGAGGCGTCTTG---
GGCGAGGGGTCAAGGGC

PB0025.1_Glis2_1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CGAGGCGTCTTG-
NTNTGGGGGGTCNNNA

MA0146.2_Zfx/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CGAGGCGTCTTG
GGGGCCGAGGCCTG---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CGAGGCGTCTTG
----CTGTCTGG