Information for 18-TAACAACACTCT (Motif 29)


Reverse Opposite:

p-value:1e-19
log p-value:-4.414e+01
Information Content per bp:1.692
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets113.7 +/- 58.2bp
Average Position of motif in Background173.4 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TAACAACACTCT
--ACAACAC---

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TAACAACACTCT
CAAACAACAACACCT-

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------TAACAACACTCT
ATGTCACAACAACAC---

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TAACAACACTCT
ATATCAAAACAAAACA--

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TAACAACACTCT
NAAACCACAG---

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TAACAACACTCT
NWAACCACADNN-

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TAACAACACTCT
GTAAACAAT-----

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TAACAACACTCT
AAAAATAACAAACGG--

MA0087.1_Sox5/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TAACAACACTCT
NAACAAT-----

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TAACAACACTCT
RNAACAATGG---