Information for 22-ATTGTCTG (Motif 32)


Reverse Opposite:

p-value:1e-16
log p-value:-3.696e+01
Information Content per bp:1.936
Number of Target Sequences with motif318.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif190.5
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets107.6 +/- 59.8bp
Average Position of motif in Background119.9 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---ATTGTCTG
CTCATTGTC--

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:ATTGTCTG-
-TWGTCTGV

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTCTG--
NNNCCATTGTGTNAN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:ATTGTCTG-
-CTGTCTGG

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---ATTGTCTG------
NNTNNTGTCTGGNNTNG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-ATTGTCTG-
VBSYGTCTGG

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATTGTCTG-----
CCATTGTATGCAAAT

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---ATTGTCTG---
AAAATTGTTATGAA

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ATTGTCTG
CCATTGTTNY

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ATTGTCTG
ATTGTT--