Information for 3-SCCTTAGGCC (Motif 5)


Reverse Opposite:

p-value:1e-91
log p-value:-2.097e+02
Information Content per bp:1.615
Number of Target Sequences with motif14729.0
Percentage of Target Sequences with motif52.73%
Number of Background Sequences with motif12832.2
Percentage of Background Sequences with motif46.66%
Average Position of motif in Targets108.9 +/- 60.6bp
Average Position of motif in Background108.9 +/- 64.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.59
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:SCCTTAGGCC--
SCCTSAGGSCAW

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:SCCTTAGGCC--
GCCTCAGGGCAT

MA0524.1_TFAP2C/Jaspar

Match Rank:3
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--SCCTTAGGCC---
TGCCCTGGGGCNANN

MA0003.2_TFAP2A/Jaspar

Match Rank:4
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----SCCTTAGGCC-
CATTGCCTCAGGGCA

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:5
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---SCCTTAGGCC--
ATTGCCTGAGGCAAT

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:6
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---SCCTTAGGCC--
ATTGCCTGAGGCGAA

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:7
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---SCCTTAGGCC--
ATTCCCTGAGGGGAA

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:8
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--SCCTTAGGCC--
TCACCTCTGGGCAG

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---SCCTTAGGCC--
ATTGCCTCAGGCAAT

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:10
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---SCCTTAGGCC-
NTGCCCTAGGGCAA