Information for 6-WAAGCACT (Motif 9)


Reverse Opposite:

p-value:1e-60
log p-value:-1.385e+02
Information Content per bp:1.610
Number of Target Sequences with motif6867.0
Percentage of Target Sequences with motif24.58%
Number of Background Sequences with motif5644.1
Percentage of Background Sequences with motif20.52%
Average Position of motif in Targets109.3 +/- 61.1bp
Average Position of motif in Background110.7 +/- 65.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:WAAGCACT---
-AAGCACTTAA

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----WAAGCACT-----
NNNNTGAGCACTGTNNG

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:WAAGCACT--
AAACCACANN

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:WAAGCACT---
-AASCACTCAA

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-WAAGCACT-
NAAACCACAG

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:WAAGCACT--
AAACCACAGC

MA0002.2_RUNX1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:WAAGCACT---
AAACCACAGAN

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--WAAGCACT-------
CATAACCACTTAACAAC

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:WAAGCACT----
-AGCCACTCAAG

POL002.1_INR/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:WAAGCACT---
---TCAGTCTT