Information for 3-TTRTAKAGTA (Motif 10)


Reverse Opposite:

p-value:1e-3
log p-value:-8.129e+00
Information Content per bp:1.732
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif27.78%
Number of Background Sequences with motif1630.3
Percentage of Background Sequences with motif3.47%
Average Position of motif in Targets184.0 +/- 135.4bp
Average Position of motif in Background227.8 +/- 200.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0032.1_FOXC1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTRTAKAGTA
--GGTAAGTA

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTRTAKAGTA--------
-TTCNAAGTACTTNNNNN

PB0051.1_Osr2_1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTRTAKAGTA------
ATGTACAGTAGCAAAG

PB0050.1_Osr1_1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTRTAKAGTA------
ATTTACAGTAGCAAAA

PB0106.1_Arid5a_2/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TTRTAKAGTA--
TNNTTTCGTATTNNANN

PB0174.1_Sox30_2/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TTRTAKAGTA------
NCGTATTATAATCNTA

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TTRTAKAGTA------
TATAATTATAATATTC

PB0069.1_Sox21_1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TTRTAKAGTA------
TTTAATTATAATTAAG

MA0087.1_Sox5/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TTRTAKAGTA-
----ATTGTTA

PB0064.1_Sox14_1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TTRTAKAGTA------
NNTAATTATAATTNNN