Information for 7-GAACATCGTT (Motif 13)


Reverse Opposite:

p-value:1e-3
log p-value:-7.867e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets229.0 +/- 0.0bp
Average Position of motif in Background197.1 +/- 99.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0044.1_Homez/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GAACATCGTT------
AAAACATCGTTTTTAAG

MA0087.1_Sox5/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GAACATCGTT-
----ATTGTTA

PH0017.1_Cux1_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GAACATCGTT-
TAGTGATCATCATTA

PB0136.1_IRC900814_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAACATCGTT---
ATGGAAAGTCGTAAAA

PB0131.1_Gmeb1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAACATCGTT-----
TNAACGACGTCGNCCA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAACATCGTT
CCAGGAACAG----

MA0007.2_AR/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAACATCGTT---
AAGAACAGAATGTTC

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAACATCGTT----
GATAACATCCTAGTAG

MA0077.1_SOX9/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAACATCGTT-
--CCATTGTTC

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAACATCGTT
AAGATATCCTT