Information for 7-GAGCGACACAGG (Motif 15)


Reverse Opposite:

p-value:1e-3
log p-value:-7.867e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.0 +/- 0.0bp
Average Position of motif in Background236.4 +/- 81.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GAGCGACACAGG
------CACAGN

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GAGCGACACAGG
----AACAAAGG

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAGCGACACAGG--
----GTCACATGAY

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GAGCGACACAGG
-----ACAAAG-

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAGCGACACAGG
--GGAACAAAGR

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGACACAGG
AGGTGNCAGACAG-

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGACACAGG
NTGATTGACAGN--

MA0514.1_Sox3/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGCGACACAGG
--AAAACAAAGG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GAGCGACACAGG
----RACAAWGG

PB0036.1_Irf6_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGCGACACAGG---
CTGATCGAAACCAAAGT