Information for 13-GTCTCGGGCCTT (Motif 19)


Reverse Opposite:

p-value:1e-3
log p-value:-7.867e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets254.0 +/- 0.0bp
Average Position of motif in Background189.4 +/- 60.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTCTCGGGCCTT
GGGGCCGAGGCCTG

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTCTCGGGCCTT
ACCACTCTCGGTCAC-

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GTCTCGGGCCTT
---CNAGGCCT-

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTCTCGGGCCTT---
NTCGCGCGCCTTNNN

PB0138.1_Irf4_2/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTCTCGGGCCTT
AGTATTCTCGGTTGC-

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GTCTCGGGCCTT
NTNGCCTCAGGCNNN

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GTCTCGGGCCTT-
-----AGGCCTAG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTCTCGGGCCTT
CTGTCTGG------

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GTCTCGGGCCTT
SCCTSAGGSCAW

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTCTCGGGCCTT
CTGTCTGTCACCT-