Information for 2-GCGAGGCTCTCG (Motif 2)


Reverse Opposite:

p-value:1e-6
log p-value:-1.510e+01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets320.0 +/- 0.0bp
Average Position of motif in Background287.1 +/- 85.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCGAGGCTCTCG-----
--NNAATTCTCGNTNAN

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCGAGGCTCTCG--
GGNGCGNCTGTTNNN

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCGAGGCTCTCG-----
--ACCACTCTCGGTCAC

PB0138.1_Irf4_2/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCGAGGCTCTCG-----
--AGTATTCTCGGTTGC

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCGAGGCTCTCG-
---AASCACTCAA

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCGAGGCTCTCG
----NGCTN---

PB0127.1_Gata6_2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCGAGGCTCTCG-----
GCGGCGATATCGCAGCG

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GCGAGGCTCTCG--
---AGCCACTCAAG

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GCGAGGCTCTCG-------
----GGNTCTCGCGAGAAC

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----GCGAGGCTCTCG
GGGGGCGGGGCC----