Information for 10-TTAATATCAA (Motif 22)


Reverse Opposite:

p-value:1e-3
log p-value:-7.174e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets85.0 +/- 0.0bp
Average Position of motif in Background227.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTAATATCAA----
AAAAATAACAAACGG

MA0151.1_ARID3A/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTAATATCAA
TTTAAT-----

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTAATATCAA----
CTAATATTGCTAAA

PH0172.1_Tlx2/Jaspar

Match Rank:4
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------TTAATATCAA
TAATTAATTAATAACTA

PB0129.1_Glis2_2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTAATATCAA---
AATATTAATAAAGA

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTAATATCAA-------
TATAGATCAAAGGAAAA

PB0105.1_Arid3a_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTAATATCAA----
ACCCGTATCAAATTT

PB0083.1_Tcf7_1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTAATATCAA-------
TATAGATCAAAGGAAAA

PH0150.1_Pou4f3/Jaspar

Match Rank:9
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TTAATATCAA
GACNTCATTAATAANN-

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTAATATCAA---
---ACATCAAAGG