Information for 11-ATCTCTTAGT (Motif 23)


Reverse Opposite:

p-value:1e-3
log p-value:-7.174e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets265.0 +/- 0.0bp
Average Position of motif in Background396.9 +/- 75.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATCTCTTAGT
-BCMATTAG-

PH0088.1_Isl2/Jaspar

Match Rank:2
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ATCTCTTAGT--
CAAAATCAATTAATTT

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------ATCTCTTAGT-
NNNCTGATATCTCNNNN

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:ATCTCTTAGT---
---YCTTTGTTCC

PB0181.1_Spdef_2/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ATCTCTTAGT--
GATAACATCCTAGTAG

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ATCTCTTAGT
TAATCAATTA--

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:ATCTCTTAGT------
ANTCCTTTGTCTNNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ATCTCTTAGT------
TNNTCCTTTGTTCTNNT

PB0135.1_Hoxa3_2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---ATCTCTTAGT-
AAAAACCATTAAGG

MA0035.3_Gata1/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----ATCTCTTAGT
TTCTTATCTGT----