Information for 13-ACGACGCTGT (Motif 24)


Reverse Opposite:

p-value:1e-3
log p-value:-7.174e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.0 +/- 0.0bp
Average Position of motif in Background202.9 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0157.1_Rhox11_1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ACGACGCTGT-------
AAGACGCTGTAAAGCGA

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ACGACGCTGT-------
AGGACGCTGTAAAGGGA

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.63
Offset:5
Orientation:forward strand
Alignment:ACGACGCTGT-
-----GCTGTG

PB0131.1_Gmeb1_2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACGACGCTGT---
TNAACGACGTCGNCCA

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ACGACGCTGT
----NGCTN-

PB0179.1_Sp100_2/Jaspar

Match Rank:6
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------ACGACGCTGT
NNTTTANNCGACGNA--

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.56
Offset:-8
Orientation:reverse strand
Alignment:--------ACGACGCTGT
NNNATTTTACGACNNTN-

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:ACGACGCTGT-------
NNNCAGCTGTCAATATN

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.54
Offset:-8
Orientation:reverse strand
Alignment:--------ACGACGCTGT
ANNATTTTACGACNTNA-

PH0067.1_Hoxc12/Jaspar

Match Rank:10
Score:0.53
Offset:-8
Orientation:reverse strand
Alignment:--------ACGACGCTGT
GNNNTTTTACGACCTNA-