Information for 14-ATTGTGCACG (Motif 25)


Reverse Opposite:

p-value:1e-3
log p-value:-7.174e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets172.0 +/- 0.0bp
Average Position of motif in Background252.3 +/- 95.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTGCACG
NNNCCATTGTGTNAN

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ATTGTGCACG-----
TACATGTGCACATAAAA

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATTGTGCACG-----
CAGATGTGCACATACGT

MA0078.1_Sox17/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ATTGTGCACG
CTCATTGTC----

MA0102.3_CEBPA/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATTGTGCACG
NATTGTGCAAT

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----ATTGTGCACG--
AATCAATTGTTCCGCTA

PB0183.1_Sry_2/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTGCACG--
CNNNTATTGTTCNNNNN

MA0084.1_SRY/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATTGTGCACG
ATTGTTTAN-

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------ATTGTGCACG-
ANNTCTATTGTTCNNNA

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ATTGTGCACG
ATTGCGCAAC