Information for 17-GCTAAACAAT (Motif 27)


Reverse Opposite:

p-value:1e-3
log p-value:-7.174e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets107.0 +/- 0.0bp
Average Position of motif in Background134.2 +/- 121.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0084.1_SRY/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCTAAACAAT
-GTAAACAAT

MA0087.1_Sox5/Jaspar

Match Rank:2
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:GCTAAACAAT
---NAACAAT

MA0040.1_Foxq1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GCTAAACAAT-
AATAAACAATN

MA0030.1_FOXF2/Jaspar

Match Rank:4
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GCTAAACAAT
CAAACGTAAACAAT

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GCTAAACAAT-----
TCACGGAACAATAGGTG

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:GCTAAACAAT
----AACAAT

PB0017.1_Foxj3_1/Jaspar

Match Rank:7
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GCTAAACAAT---
AAAAAGTAAACAAACAC

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCTAAACAAT------
-ATAAACAATTAAACA

MA0077.1_SOX9/Jaspar

Match Rank:9
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GCTAAACAAT--
---GAACAATGG

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GCTAAACAAT------
TAGTGAACAATAGATTT