Information for 18-GGTATTGCCT (Motif 28)


Reverse Opposite:

p-value:1e-3
log p-value:-7.174e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets160.0 +/- 0.0bp
Average Position of motif in Background145.0 +/- 41.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GGTATTGCCT--
GGGATTGCATNN

MA0107.1_RELA/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGTATTGCCT
GGGAATTTCC-

MA0105.3_NFKB1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGTATTGCCT
GGGAATTTCCC

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGTATTGCCT
GGGGATTTCC-

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGTATTGCCT
GGGAATTTCC-

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGTATTGCCT---
---ATTTCCTGTN

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GGTATTGCCT-
GCGGAGGTGTCGCCTC

MA0101.1_REL/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGTATTGCCT
GGGGATTTCC-

MA0156.1_FEV/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGTATTGCCT-
---ATTTCCTG

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGTATTGCCT-
NNACTTGCCTT