Information for 19-TAGCTAGTCG (Motif 29)


Reverse Opposite:

p-value:1e-3
log p-value:-7.174e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets210.0 +/- 0.0bp
Average Position of motif in Background372.5 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TAGCTAGTCG--
GANGTTAACTAGTTTNN

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------TAGCTAGTCG-
AGCTGTTAACTAGCCGT

PB0155.1_Osr2_2/Jaspar

Match Rank:3
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------TAGCTAGTCG
NNTGTAGGTAGCANNT--

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TAGCTAGTCG----
GNNAGCTAATCCCCCN

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TAGCTAGTCG
ACTAGCCAATCA

PB0154.1_Osr1_2/Jaspar

Match Rank:6
Score:0.52
Offset:-8
Orientation:reverse strand
Alignment:--------TAGCTAGTCG
NNNTTAGGTAGCNTNT--

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TAGCTAGTCG
--GCTAATCC

MA0029.1_Mecom/Jaspar

Match Rank:8
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---TAGCTAGTCG-
TNTTATCTTATCTT

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TAGCTAGTCG
-NGCTN----

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----TAGCTAGTCG-
NCCGTTGCTANGNGN