Information for 3-WGSAYGWCCGMY (Motif 3)


Reverse Opposite:

p-value:1e-6
log p-value:-1.403e+01
Information Content per bp:1.818
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif47.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets237.0 +/- 68.2bp
Average Position of motif in Background224.6 +/- 140.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0131.1_HINFP/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:WGSAYGWCCGMY
-TAACGTCCGC-

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:WGSAYGWCCGMY
-GCACGTNC---

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:WGSAYGWCCGMY
--CATGAC----

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:WGSAYGWCCGMY
--NRYTTCCGGH

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:WGSAYGWCCGMY
-GCACGTAY---

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:WGSAYGWCCGMY
-GCACGTACCC-

PB0115.1_Ehf_2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-WGSAYGWCCGMY---
TAGTATTTCCGATCTT

PB0020.1_Gabpa_1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-WGSAYGWCCGMY----
NNNNACTTCCGGTATNN

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:WGSAYGWCCGMY
--HACTTCCGGY

ETS(ETS)/Promoter/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:WGSAYGWCCGMY-
---ACTTCCGGTT