Information for 20-GGCACGACAA (Motif 30)


Reverse Opposite:

p-value:1e-3
log p-value:-7.174e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets257.0 +/- 0.0bp
Average Position of motif in Background309.9 +/- 53.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGCACGACAA-----
ATTTACGACAAATAGC

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGCACGACAA---
ATGTCACAACAACAC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGCACGACAA
TBGCACGCAA-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGCACGACAA---
---RNAACAATGG

PB0094.1_Zfp128_1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GGCACGACAA---
TTNGGGTACGCCNNANN

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GGCACGACAA----
-----GACAATGNN

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGCACGACAA
---ACGTCA-

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------GGCACGACAA
NNNNTTGGGCACNNCN-

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCACGACAA
BGCACGTA--

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GGCACGACAA--
NNGGCCACGCCTTTN