Information for 18-GAGGGTTTTGAG (Motif 35)


Reverse Opposite:

p-value:1e-3
log p-value:-7.174e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets304.0 +/- 0.0bp
Average Position of motif in Background253.0 +/- 129.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GAGGGTTTTGAG
-NGGGATTA---

MA0133.1_BRCA1/Jaspar

Match Rank:2
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GAGGGTTTTGAG
----GTGTTGN-

PB0034.1_Irf4_1/Jaspar

Match Rank:3
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GAGGGTTTTGAG---
TNTGGTTTCGATACN

PB0046.1_Mybl1_1/Jaspar

Match Rank:4
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGGTTTTGAG
NNANTAACGGTTNNNAN

PB0194.1_Zbtb12_2/Jaspar

Match Rank:5
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GAGGGTTTTGAG----
-AGNGTTCTAATGANN

PB0045.1_Myb_1/Jaspar

Match Rank:6
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGGTTTTGAG
NNNNTAACGGTTNNNAN

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:GAGGGTTTTGAG----
------TTTGAAACCG

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:GAGGGTTTTGAG--
----CCTTTGATGT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:9
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:GAGGGTTTTGAG-----
------CTTGAGTGGCT

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GAGGGTTTTGAG--
TTAGAGGGATTAACAAT