Information for 4-RMKGTCCAGRAT (Motif 4)


Reverse Opposite:

p-value:1e-5
log p-value:-1.297e+01
Information Content per bp:1.860
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif67.2
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets264.3 +/- 20.8bp
Average Position of motif in Background219.0 +/- 161.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:RMKGTCCAGRAT--
----ANCAGGATGT

MA0463.1_Bcl6/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RMKGTCCAGRAT-
NGCTTTCTAGGAAN

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RMKGTCCAGRAT-
NNNCTTTCCAGGAAA

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----RMKGTCCAGRAT
GGCAAAAGTCCAATAA

PB0006.1_Bcl6b_1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:RMKGTCCAGRAT----
TCTTTCGAGGAATTTG

MA0137.3_STAT1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:RMKGTCCAGRAT-
--TTTCCAGGAAA

MA0138.2_REST/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---RMKGTCCAGRAT------
GGCGCTGTCCATGGTGCTGAA

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:RMKGTCCAGRAT------
--CTACTAGGATGTNNTN

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---RMKGTCCAGRAT-----
GGAGCTGTCCATGGTGCTGA

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:RMKGTCCAGRAT-
-NTTTCCNGGAAA