Information for 5-TTAATAAGCGCT (Motif 5)


Reverse Opposite:

p-value:1e-5
log p-value:-1.233e+01
Information Content per bp:1.858
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets289.0 +/- 30.5bp
Average Position of motif in Background86.9 +/- 49.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTAATAAGCGCT-----
NNNNTGAGCACTGTNNG

PB0008.1_E2F2_1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTAATAAGCGCT--
ATAAAGGCGCGCGAT

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:TTAATAAGCGCT-
--------NGCTN

PB0009.1_E2F3_1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTAATAAGCGCT--
ATAAGGGCGCGCGAT

PH0096.1_Lhx6_1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TTAATAAGCGCT-
TACATTAATTAACGNTN

PH0073.1_Hoxc9/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTAATAAGCGCT
NNAATTAATGACCNNN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTAATAAGCGCT
TTTTATTRGN---

PH0097.1_Lhx6_2/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TTAATAAGCGCT-
TCCACTAATTAGCGGTT

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTAATAAGCGCT
TTTAATTGCN---

PH0175.1_Vax2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TTAATAAGCGCT-
GNCTTAATTAGTGNNN