Information for 1-GTGTGTGCGC (Motif 6)


Reverse Opposite:

p-value:1e-3
log p-value:-9.063e+00
Information Content per bp:1.946
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif251.0
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets251.3 +/- 116.0bp
Average Position of motif in Background220.2 +/- 168.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----GTGTGTGCGC--
NNGCGTGTGTGCNGCN

MA0472.1_EGR2/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GTGTGTGCGC---
GTGCGTGGGCGGGNG

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTGTGTGCGC
TGCGTGGGYG-

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GTGTGTGCGC--
NNNNTTGTGTGCTTNN

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTGTGTGCGC-----
NTNTATGTGCACATNNN

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTGTGTGCGC-----
NNGTATGTGCACATNNN

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTGTGTGCGC-
NGCGTGGGCGGR

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTGTGTGCGC------
NSTGTTTRCWCAGBNNN

MA0506.1_NRF1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTGTGTGCGC-
GCGCCTGCGCA

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTGTGTGCGC
NTGGGTGTGGCC