Information for 2-ATTTAGAGCC (Motif 9)


Reverse Opposite:

p-value:1e-3
log p-value:-8.795e+00
Information Content per bp:1.890
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif47.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets325.3 +/- 102.3bp
Average Position of motif in Background205.7 +/- 186.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0485.1_Hoxc9/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ATTTAGAGCC
NTGATTTATGGCC

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATTTAGAGCC
TGATTTATGGCC

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATTTAGAGCC--
GGTTAGAGACCT

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATTTAGAGCC
TGATTTATGGCC

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:forward strand
Alignment:ATTTAGAGCC
-----CAGCC

PH0158.1_Rhox11_2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATTTAGAGCC----
TCNCTTTACAGCGNNNT

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATTTAGAGCC----
TCNNTTTACAGCGNNNT

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ATTTAGAGCC
TGAGTGACAGSC

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ATTTAGAGCC----
NNATTGACAGGTGCTT

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ATTTAGAGCC----
GATATTGACAGCTGCGT