Information for 16-TTTRGAATCTGC (Motif 11)


Reverse Opposite:

p-value:1e-10
log p-value:-2.430e+01
Information Content per bp:1.678
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif14.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets136.5 +/- 69.3bp
Average Position of motif in Background142.3 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTRGAATCTGC--
TTCTAGAABNTTCTA

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTRGAATCTGC-------
TTCTAGAANNTTCCAGAANN

MA0486.1_HSF1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTTRGAATCTGC-
CTTCTAGAAGGTTCT

POL002.1_INR/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TTTRGAATCTGC
----NNNANTGA

MA0090.1_TEAD1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTTRGAATCTGC
CNGAGGAATGTG-

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTTRGAATCTGC-----
CTCAGCAGCTGCTACTG

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TTTRGAATCTGC
--GGGAATTTCC

MA0114.2_HNF4A/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TTTRGAATCTGC----
-CTGGACTTTGGACTC

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TTTRGAATCTGC--
NNATTGGACTTTNGNN

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TTTRGAATCTGC------
--TGGACTTTGNNCTNTG