Information for 14-GGACCTCTCT (Motif 12)


Reverse Opposite:

p-value:1e-10
log p-value:-2.348e+01
Information Content per bp:1.652
Number of Target Sequences with motif134.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2523.7
Percentage of Background Sequences with motif7.99%
Average Position of motif in Targets115.3 +/- 68.5bp
Average Position of motif in Background119.6 +/- 93.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GGACCTCTCT--
NNGCACCTTTCTCC

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGACCTCTCT--
NNNNTTGACCCCTNNNN

MA0512.1_Rxra/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGACCTCTCT
NCTGACCTTTG-

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGACCTCTCT
TGACCT----

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGACCTCTCT--
NNNNTGACCTTTNNNN

MA0071.1_RORA_1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGACCTCTCT
TGACCTTGAT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGACCTCTCT-
-AASCACTCAA

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGACCTCTCT--
NNNGTGACCTTTGNNN

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGACCTCTCT--
TGACCTTTNCNT

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGACCTCTCT--
GGACCACCCACG