Information for 16-GACAGCCCGG (Motif 15)


Reverse Opposite:

p-value:1e-7
log p-value:-1.841e+01
Information Content per bp:1.814
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif2.88%
Number of Background Sequences with motif242.6
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets100.5 +/- 66.9bp
Average Position of motif in Background115.4 +/- 94.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.35
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.71
Offset:-8
Orientation:reverse strand
Alignment:--------GACAGCCCGG
NNNTGAGTGACAGCT---

PH0169.1_Tgif1/Jaspar

Match Rank:2
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------GACAGCCCGG-
GATATTGACAGCTGCGT

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GACAGCCCGG
CACAGN----

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GACAGCCCGG
VBTGWCAGCB---

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGCCCGG-
NNATTGACAGGTGCTT

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGCCCGG
TGAGTGACAGSC---

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGCCCGG-
GTATTGACAGGTNNTT

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGCCCGG-
NTATTGACAGCTNNTT

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGCCCGG-
GGATTGACAGGTCNTT

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGCCCGG-
NTATTGACAGGTNNTN