Information for 19-CAGCCTGGASCA (Motif 17)


Reverse Opposite:

p-value:1e-5
log p-value:-1.154e+01
Information Content per bp:1.847
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif24.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets139.1 +/- 80.5bp
Average Position of motif in Background97.5 +/- 96.9bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)2.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0524.1_TFAP2C/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGCCTGGASCA---
TGCCCTGGGGCNANN

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGCCTGGASCA--
ATTGCCTGAGGCAAT

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGCCTGGASCA
ACATCCTGNT---

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGCCTGGASCA--
ATTGCCTCAGGCAAT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAGCCTGGASCA-
---CCAGGAACAG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGCCTGGASCA
CTGTCTGG----

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTGGASCA
BCAGACWA-----

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGCCTGGASCA
CAGCC-------

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CAGCCTGGASCA---------
-NNCCTGNAAAAAAAAAAAAA

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CAGCCTGGASCA---
-----GGGAGGACNG