Information for 20-TCKATCTATCTA (Motif 19)


Reverse Opposite:

p-value:1e-4
log p-value:-1.035e+01
Information Content per bp:1.740
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.77%
Number of Background Sequences with motif352.6
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets134.9 +/- 69.6bp
Average Position of motif in Background113.9 +/- 117.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0070.1_PBX1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCKATCTATCTA-
-CCATCAATCAAA

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCKATCTATCTA
-NTATYGATCH-

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCKATCTATCTA---
ATGGGATATATCCGCCT

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCKATCTATCTA
GYCATCMATCAT

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCKATCTATCTA
-TCATCAATCA-

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TCKATCTATCTA
CTTATCTCHMCATCT-

PB0144.1_Lef1_2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCKATCTATCTA---
GAAGATCAATCACTTA

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCKATCTATCTA--
TCACCCATCAATAAACA

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TCKATCTATCTA
---YSTTATCT-

MA0033.1_FOXL1/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TCKATCTATCTA--
------TATGTNTA