Information for 3-TRTACATACR (Motif 2)


Reverse Opposite:

p-value:1e-38
log p-value:-8.883e+01
Information Content per bp:1.752
Number of Target Sequences with motif159.0
Percentage of Target Sequences with motif16.95%
Number of Background Sequences with motif1629.6
Percentage of Background Sequences with motif5.16%
Average Position of motif in Targets118.6 +/- 61.6bp
Average Position of motif in Background117.6 +/- 139.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.55
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TRTACATACR
TATACATA--

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TRTACATACR----
ATTTGCATACAATGG

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TRTACATACR---
ATGGGATATATCCGCCT

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TRTACATACR--
TNNATTATGCATANNTT

PB0198.1_Zfp128_2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TRTACATACR
NNTATANATATACN

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TRTACATACR-
-ATGMATATDC

MA0032.1_FOXC1/Jaspar

Match Rank:7
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TRTACATACR----
------TACTNNNN

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TRTACATACR-
TNTAATTTGCATACNA

NRF(NRF)/Promoter/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TRTACATACR-
GTGCGCATGCGC

PB0044.1_Mtf1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TRTACATACR----
NNTTTGCACACGGCCC