Information for 21-GATAGATGATAR (Motif 20)


Reverse Opposite:

p-value:1e-4
log p-value:-9.733e+00
Information Content per bp:1.707
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif223.4
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets120.4 +/- 59.5bp
Average Position of motif in Background108.3 +/- 106.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)2.84
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0021.1_Gata3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GATAGATGATAR------
TTTTTAGAGATAAGAAATAAAG

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GATAGATGATAR
ATGATKGATGRC--

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GATAGATGATAR
TGATTGATGA---

MA0035.3_Gata1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GATAGATGATAR
-ANAGATAAGAA

PB0023.1_Gata6_1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GATAGATGATAR---
TATAGAGATAAGAATTG

MA0037.2_GATA3/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GATAGATGATAR
---AGATAAGA-

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GATAGATGATAR
---AGATAASR-

MA0029.1_Mecom/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GATAGATGATAR--
AAGATAAGATAACA

PH0017.1_Cux1_2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GATAGATGATAR---
TAATGATGATCACTA

MA0070.1_PBX1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GATAGATGATAR
TTTGATTGATGN---