Information for 17-GCACTGAT (Motif 22)


Reverse Opposite:

p-value:1e-3
log p-value:-8.191e+00
Information Content per bp:1.963
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif273.5
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets133.0 +/- 66.6bp
Average Position of motif in Background113.0 +/- 87.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GCACTGAT--
GCAGTGATTT

MA0483.1_Gfi1b/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCACTGAT--
TGCTGTGATTT

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------GCACTGAT--
NNNNTGAGCACTGTNNG

MA0038.1_Gfi1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCACTGAT---
-CNGTGATTTN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCACTGAT
AAGCACTTAA

MA0122.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCACTGAT
NCCACTTAN

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCACTGAT
AASCACTCAA

POL002.1_INR/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCACTGAT
NNNANTGA-

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCACTGAT-----
AATCGCACTGCATTCCG

PB0022.1_Gata5_1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCACTGAT--------
TAAACTGATAAGAAGAT