Information for 18-CGGACCAG (Motif 23)


Reverse Opposite:

p-value:1e-3
log p-value:-7.734e+00
Information Content per bp:1.477
Number of Target Sequences with motif111.0
Percentage of Target Sequences with motif11.83%
Number of Background Sequences with motif2715.0
Percentage of Background Sequences with motif8.59%
Average Position of motif in Targets127.0 +/- 72.0bp
Average Position of motif in Background121.5 +/- 93.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGGACCAG
CGGAGC--

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGGACCAG
CCAGGAACAG

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGGACCAG-----
NNAGGGACAAGGGCNC

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGGACCAG-----
-GGACCACCCACG

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGGACCAG
-TGACCT-

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGGACCAG------
CATAAGACCACCATTAC

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CGGACCAG-
---CACAGN

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGGACCAG--
GGGAGGACNG

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CGGACCAG---
---ANCAGCTG

POL002.1_INR/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGGACCAG----
----TCAGTCTT