Information for 23-CACGCGTTTATG (Motif 25)


Reverse Opposite:

p-value:1e-2
log p-value:-6.381e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets115.3 +/- 63.9bp
Average Position of motif in Background86.6 +/- 42.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CACGCGTTTATG
CACGCA------

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CACGCGTTTATG
NNGGCCACGCCTTTN--

MA0465.1_CDX2/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CACGCGTTTATG----
-----TTTTATGGCTN

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CACGCGTTTATG
CACGTGNT----

PB0043.1_Max_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CACGCGTTTATG
TGACCACGTGGTCGGG

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CACGCGTTTATG--
----NTTTTATGAC

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CACGCGTTTATG
ACCACGTGGTNN--

MA0004.1_Arnt/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CACGCGTTTATG
CACGTG------

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CACGCGTTTATG---
-----TTTTATTRGN

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CACGCGTTTATG
NCCACGTG------