Information for 7-CAGACAGASACA (Motif 3)


Reverse Opposite:

p-value:1e-32
log p-value:-7.552e+01
Information Content per bp:1.699
Number of Target Sequences with motif230.0
Percentage of Target Sequences with motif24.52%
Number of Background Sequences with motif3362.7
Percentage of Background Sequences with motif10.64%
Average Position of motif in Targets122.2 +/- 70.4bp
Average Position of motif in Background124.9 +/- 108.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0042.1_FOXI1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CAGACAGASACA-
-AAACAAACANNC

MA0481.1_FOXP1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGACAGASACA-
CAAAAGTAAACAAAG

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAGACAGASACA
-AAATAAACA--

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGACAGASACA---
AGCGGCACACACGCAA

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAGACAGASACA-
AAACAGACAAAGGAAT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CAGACAGASACA-
---CCAGACRSVB

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAGASACA
CCAGACAG-----

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CAGACAGASACA-
WNAGTCADAVTGAAACTN

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGACAGASACA---
CGAAGCACACAAAATA

MA0593.1_FOXP2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGACAGASACA
-AAGTAAACAAA