Information for 9-CATGCACGCA (Motif 4)


Reverse Opposite:

p-value:1e-28
log p-value:-6.551e+01
Information Content per bp:1.666
Number of Target Sequences with motif189.0
Percentage of Target Sequences with motif20.15%
Number of Background Sequences with motif2654.8
Percentage of Background Sequences with motif8.40%
Average Position of motif in Targets122.7 +/- 66.9bp
Average Position of motif in Background124.7 +/- 142.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CATGCACGCA-
-TBGCACGCAA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CATGCACGCA
----CACGCA

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CATGCACGCA--
GACCACATTCATACAAT

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATGCACGCA-----
CGAAGCACACAAAATA

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CATGCACGCA
CRCCCACGCA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATGCACGCA--
-AGCCACTCAAG

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CATGCACGCA-----
AGCGGCACACACGCAA

NRF(NRF)/Promoter/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CATGCACGCA
GCGCATGCGCAC-

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CATGCACGCA-
---GCACGTAY

MA0472.1_EGR2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CATGCACGCA-
CCCCCGCCCACGCAC