Information for 12-GCATTCRACTCA (Motif 6)


Reverse Opposite:

p-value:1e-16
log p-value:-3.880e+01
Information Content per bp:1.943
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets82.5 +/- 52.8bp
Average Position of motif in Background121.5 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0090.1_TEAD1/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCATTCRACTCA
CACATTCCTCCG-

MA0099.2_JUN::FOS/Jaspar

Match Rank:2
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCATTCRACTCA
-----TGACTCA

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCATTCRACTCA--
ACATTCATGACACG

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCATTCRACTCA
RCATTCCWGG--

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCATTCRACTCA-
----NCCACTTAN

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GCATTCRACTCA-
GACCACATTCATACAAT

PB0171.1_Sox18_2/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GCATTCRACTCA
NNNNTGAATTCANNNC-

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCATTCRACTCA
GCATTCCAGN--

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GCATTCRACTCA-
---DATGASTCAT

MA0462.1_BATF::JUN/Jaspar

Match Rank:10
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GCATTCRACTCA----
-----TGAGTCATTTC