Information for 13-TTTCGTTGGAAA (Motif 7)


Reverse Opposite:

p-value:1e-16
log p-value:-3.880e+01
Information Content per bp:1.974
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets173.4 +/- 48.9bp
Average Position of motif in Background163.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0520.1_Stat6/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTTCGTTGGAAA--
ANTTCTCAGGAANNN

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTTCGTTGGAAA
ANTTCTNNAGAA-

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTCGTTGGAAA
-TTCTNMGGAA-

MA0152.1_NFATC2/Jaspar

Match Rank:4
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:TTTCGTTGGAAA-
------TGGAAAA

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:5
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TTTCGTTGGAAA--
----AATGGAAAAT

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TTTCGTTGGAAA-
---CSTGGGAAAD

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTCGTTGGAAA--
TTGCCATGGCAACC

PB0035.1_Irf5_1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTTCGTTGGAAA
NTGGTTTCGGTTNNN-

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTCGTTGGAAA--
TTGCCATGGCAACN

MA0144.2_STAT3/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTTCGTTGGAAA
-CTTCTGGGAAA