Information for 13-GAACATTCCT (Motif 9)


Reverse Opposite:

p-value:1e-10
log p-value:-2.526e+01
Information Content per bp:1.944
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif23.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets114.7 +/- 51.7bp
Average Position of motif in Background87.3 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0090.1_TEAD1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GAACATTCCT---
-CACATTCCTCCG

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:2
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GAACATTCCT--
--RCATTCCWGG

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:3
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GAACATTCCT--
--RCATTCCWGG

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GAACATTCCT--
--GCATTCCAGN

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GAACATTCCT-----
TTCTAGAANNTTCCAGAANN

MA0087.1_Sox5/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAACATTCCT
NAACAAT---

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAACATTCCT
-AACAAT---

PB0063.1_Sox13_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAACATTCCT--
TTAAGAACAATAAATT

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GAACATTCCT
TTCTAGAABNTTCTA

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAACATTCCT--
TTTAGAACAATAAAAT