Information for 1-RTGTGTATATRT (Motif 1)


Reverse Opposite:

p-value:1e-20
log p-value:-4.804e+01
Information Content per bp:1.854
Number of Target Sequences with motif110.0
Percentage of Target Sequences with motif7.34%
Number of Background Sequences with motif1104.4
Percentage of Background Sequences with motif2.59%
Average Position of motif in Targets113.5 +/- 58.6bp
Average Position of motif in Background114.6 +/- 120.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)3.88
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:RTGTGTATATRT-----
ANNNGGATATATCCNNN

PB0198.1_Zfp128_2/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:RTGTGTATATRT---
-TGTATATATATACC

PB0016.1_Foxj1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---RTGTGTATATRT-
NNNNTTTGTTTACNNT

MA0033.1_FOXL1/Jaspar

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:RTGTGTATATRT-
-----TATGTNTA

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:RTGTGTATATRT
ATTTGCATAT--

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:RTGTGTATATRT
---TGTTTATTT

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RTGTGTATATRT
NNTGTGGATTSS-

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:RTGTGTATATRT
--ATGMATATDC

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---RTGTGTATATRT--
TACATGTGCACATAAAA

MA0042.1_FOXI1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--RTGTGTATATRT
GGATGTTTGTTT--