Information for 13-GCAGAGGGAAGG (Motif 12)


Reverse Opposite:

p-value:1e-10
log p-value:-2.476e+01
Information Content per bp:1.656
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif6.54%
Number of Background Sequences with motif1331.2
Percentage of Background Sequences with motif3.12%
Average Position of motif in Targets112.9 +/- 62.1bp
Average Position of motif in Background115.0 +/- 68.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCAGAGGGAAGG-
-GAAAGTGAAAGT

MA0508.1_PRDM1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAGAGGGAAGG---
AGAAAGTGAAAGTGA

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCAGAGGGAAGG
--GGCGGGAARN

MA0471.1_E2F6/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCAGAGGGAAGG
-GGGCGGGAAGG

MA0051.1_IRF2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCAGAGGGAAGG------
GGAAAGCGAAACCAAAAC

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCAGAGGGAAGG--
TGCGCATAGGGGAGGAG

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCAGAGGGAAGG
TAGGGCAAAGGTCA--

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCAGAGGGAAGG
--AVCAGGAAGT

MA0461.1_Atoh1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCAGAGGGAAGG
-CAGATGGC---

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAGGGAAGG
AACAGATGGC---