Information for 18-GGCGGTTACCGC (Motif 18)


Reverse Opposite:

p-value:1e-9
log p-value:-2.157e+01
Information Content per bp:1.898
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.5 +/- 80.7bp
Average Position of motif in Background106.6 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGCGGTTACCGC
GGCVGTTR----

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCGGTTACCGC
BRRCVGTTDN---

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGCGGTTACCGC
TGGCAGTTGG---

MA0111.1_Spz1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGCGGTTACCGC
-GCTGTTACCCT

PB0156.1_Plagl1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGCGGTTACCGC--
GCTGGGGGGTACCCCTT

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGCGGTTACCGC---
-----TTCCCGCCWG

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGCGGTTACCGC
TGTCGGTT-----

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGCGGTTACCGC
GGGGATTTCC--

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGCGGTTACCGC
GGGGATTCCCCC

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GGCGGTTACCGC-
---DTTTCCCGCC