Information for 16-CTACTTACRT (Motif 23)


Reverse Opposite:

p-value:1e-7
log p-value:-1.803e+01
Information Content per bp:1.902
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif54.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets128.9 +/- 55.5bp
Average Position of motif in Background99.7 +/- 91.9bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0155.1_Osr2_2/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CTACTTACRT-
ACTTGCTACCTACACC

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTACTTACRT-
NNACTTACCTN

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CTACTTACRT-
ACATGCTACCTAATAC

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTACTTACRT
ATACTTA---

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTACTTACRT
-TACTNNNN-

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CTACTTACRT--
CTTAACCACTTAAGGAT

MA0122.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTACTTACRT
NCCACTTAN--

MA0025.1_NFIL3/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTACTTACRT--
-ANGTTACATAA

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTACTTACRT
NCTAATTA---

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTACTTACRT
YTAATTAVHT