Information for 5-GCCCTAAGGA (Motif 4)


Reverse Opposite:

p-value:1e-14
log p-value:-3.367e+01
Information Content per bp:1.468
Number of Target Sequences with motif495.0
Percentage of Target Sequences with motif33.04%
Number of Background Sequences with motif10252.1
Percentage of Background Sequences with motif24.05%
Average Position of motif in Targets114.4 +/- 60.6bp
Average Position of motif in Background111.0 +/- 71.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GCCCTAAGGA
ATGCCCTGAGGC

MA0003.2_TFAP2A/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTAAGGA----
TGCCCTGAGGCANTN

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTAAGGA
WTGSCCTSAGGS

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTAAGGA--
NTGCCCANNGGTNA

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTAAGGA--
NTGCCCTAGGGCAA

MA0524.1_TFAP2C/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTAAGGA----
TGCCCTGGGGCNANN

MA0136.1_ELF5/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCCCTAAGGA----
-----AAGGAAGTA

MA0124.1_NKX3-1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCCCTAAGGA-
----TAAGTAT

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCTAAGGA
NGTCCCNNGGGA

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCCTAAGGA
GTCCCCAGGGGA