Information for 4-GAGTTGAACCTT (Motif 5)


Reverse Opposite:

p-value:1e-14
log p-value:-3.319e+01
Information Content per bp:1.876
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets105.6 +/- 56.9bp
Average Position of motif in Background92.1 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTGAACCTT----
NNANTTGACCCCTNNNN

MA0017.1_NR2F1/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GAGTTGAACCTT------
----TGACCTTTGAACCT

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGTTGAACCTT----
NNNNTGACCTTTNNNN

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGTTGAACCTT----
NNNGTGACCTTTGNNN

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGTTGAACCTT
--TTTGAAACCG

MA0133.1_BRCA1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGTTGAACCTT
GTGTTGN-----

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGTTGAACCTT----
TGTCGTGACCCCTTAAT

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGTTGAACCTT--
-GGTTAAACATTAA

MA0153.1_HNF1B/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGTTGAACCTT--
--GTTAAATATTAA

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GAGTTGAACCTT----
----TGACCTTTNCNT